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Sample GSM1830517 Query DataSets for GSM1830517
Status Public on Jul 23, 2015
Title WB_non-statin_pt_260
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 67
Sex: F
smoking status: Former smoker
fev1% predicted: NA
fev1/fvc: NA
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.411081959
7892504 9.186468112
7892507 6.919901386
7892508 7.399610839
7892509 8.972664754
7892510 6.104050142
7892514 9.557244482
7892515 10.08245437
7892516 5.700030075
7892517 8.297164856
7892520 9.165700007
7892521 9.360213544
7892527 8.135245658
7892530 8.254360957
7892531 8.121574795
7892533 6.955298047
7892534 7.262697857
7892535 7.662247944
7892536 11.13480261
7892538 7.117878493

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830517_S548.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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