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Sample GSM1830515 Query DataSets for GSM1830515
Status Public on Jul 23, 2015
Title WB_statin_pt_100
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 59
Sex: M
smoking status: Current smoker
fev1% predicted: 70.9
fev1/fvc: 55.3
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.503755812
7892504 8.769659609
7892507 7.054832093
7892508 7.738213611
7892509 8.890400335
7892510 6.780133501
7892514 9.882675832
7892515 9.906638158
7892516 5.723598351
7892517 8.170491847
7892520 9.566890476
7892521 9.512769982
7892527 8.40123287
7892530 8.502131246
7892531 8.142051212
7892533 6.702004563
7892534 8.145451486
7892535 7.19940772
7892536 11.55967896
7892538 7.150857491

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830515_S992.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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