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Sample GSM1830511 Query DataSets for GSM1830511
Status Public on Jul 23, 2015
Title WB_statin_pt_96
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 64
Sex: M
smoking status: Former smoker
fev1% predicted: 61.3
fev1/fvc: 51.81
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.47797417
7892504 9.634217148
7892507 6.985863872
7892508 7.603788224
7892509 9.177023302
7892510 6.383664606
7892514 10.08928469
7892515 10.97631845
7892516 5.700560873
7892517 8.241265418
7892520 10.29602365
7892521 9.415542396
7892527 8.492415921
7892530 9.138285702
7892531 8.45796272
7892533 7.413528104
7892534 7.227545389
7892535 7.935874295
7892536 11.48845353
7892538 7.402731901

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830511_S917.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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