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Sample GSM1830507 Query DataSets for GSM1830507
Status Public on Jul 23, 2015
Title WB_statin_pt_94
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 69
Sex: M
smoking status: Former smoker
fev1% predicted: 36.5
fev1/fvc: 54.45
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.42607078
7892504 9.240104941
7892507 6.821738224
7892508 7.378984621
7892509 8.861239461
7892510 5.730681654
7892514 9.98801684
7892515 10.01829118
7892516 5.55481383
7892517 8.133529402
7892520 9.258869294
7892521 9.372884673
7892527 8.237376687
7892530 8.540334114
7892531 8.572295744
7892533 6.778921302
7892534 7.230665888
7892535 7.428280107
7892536 11.44947052
7892538 7.073545045

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830507_S935.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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