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Sample GSM1830506 Query DataSets for GSM1830506
Status Public on Jul 23, 2015
Title WB_non-statin_pt_257
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 58
Sex: F
smoking status: Current smoker
fev1% predicted: 64.6
fev1/fvc: 56.98
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.567171467
7892504 9.458885884
7892507 7.650305483
7892508 7.459674033
7892509 8.283419249
7892510 5.380659732
7892514 10.10194294
7892515 10.26560793
7892516 5.811114115
7892517 7.641006581
7892520 9.321322408
7892521 9.37781363
7892527 8.260626819
7892530 8.3099056
7892531 8.532425724
7892533 6.806214741
7892534 7.279014673
7892535 7.761629968
7892536 11.37361361
7892538 6.89397027

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830506_S752.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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