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Sample GSM1830504 Query DataSets for GSM1830504
Status Public on Jul 23, 2015
Title WB_statin_pt_93
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 44.2
fev1/fvc: 49.29
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.566886703
7892504 9.035040703
7892507 7.162313388
7892508 7.809402268
7892509 9.06441766
7892510 6.422274199
7892514 10.20072646
7892515 9.789763626
7892516 5.73103773
7892517 8.235642209
7892520 9.215008273
7892521 9.553275395
7892527 8.179508286
7892530 8.54681826
7892531 8.528938621
7892533 6.614657623
7892534 7.260708147
7892535 7.831602331
7892536 11.36152273
7892538 6.879725096

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830504_S562.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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