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Sample GSM1830498 Query DataSets for GSM1830498
Status Public on Jul 23, 2015
Title WB_non-statin_pt_252
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 72
Sex: M
smoking status: Current smoker
fev1% predicted: 33.4
fev1/fvc: 29.25
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.329684307
7892504 9.292770643
7892507 7.429464041
7892508 7.318384964
7892509 8.97950567
7892510 6.017922565
7892514 9.731911346
7892515 10.12512111
7892516 5.728605126
7892517 8.003888488
7892520 9.33268858
7892521 9.498607439
7892527 8.196521619
7892530 8.331172928
7892531 8.023694139
7892533 6.660040804
7892534 7.429189171
7892535 8.227158268
7892536 11.2034688
7892538 6.940232039

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830498_S664.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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