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Sample GSM1830497 Query DataSets for GSM1830497
Status Public on Jul 23, 2015
Title WB_non-statin_pt_251
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: F
smoking status: Former smoker
fev1% predicted: 30.5
fev1/fvc: 42.06
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.633738958
7892504 9.318813684
7892507 7.052427142
7892508 7.387149342
7892509 8.680664144
7892510 6.485354384
7892514 9.877079099
7892515 10.02637372
7892516 5.712424975
7892517 8.552035448
7892520 9.449457233
7892521 9.324914539
7892527 8.171843655
7892530 8.456689033
7892531 8.297194355
7892533 8.519792404
7892534 6.944841658
7892535 7.10102547
7892536 11.11084906
7892538 6.986428123

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830497_S250.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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