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Sample GSM1830496 Query DataSets for GSM1830496
Status Public on Jul 23, 2015
Title WB_statin_pt_90
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 35.4
fev1/fvc: 36.59
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.705094116
7892504 8.976787075
7892507 7.076765193
7892508 7.546848341
7892509 8.507210286
7892510 7.234496782
7892514 10.19676514
7892515 10.08026172
7892516 5.775164527
7892517 8.185421858
7892520 9.327606804
7892521 9.760381867
7892527 8.591510338
7892530 8.624706557
7892531 8.481059773
7892533 6.742268759
7892534 7.580282886
7892535 6.939443543
7892536 11.52427513
7892538 7.055022089

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830496_S342.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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