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Sample GSM1830491 Query DataSets for GSM1830491
Status Public on Jul 23, 2015
Title WB_non-statin_pt_249
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 56
Sex: F
smoking status: Current smoker
fev1% predicted: 63.9
fev1/fvc: 65.73
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.636882629
7892504 9.222196516
7892507 6.399590313
7892508 7.332129794
7892509 8.951588662
7892510 6.453243997
7892514 10.32081035
7892515 9.713962991
7892516 5.698601331
7892517 8.209757736
7892520 8.992841022
7892521 9.386397163
7892527 8.310364759
7892530 8.498877761
7892531 8.348398885
7892533 6.860242762
7892534 5.994115232
7892535 7.286173279
7892536 11.53051372
7892538 5.577984286

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830491_S978.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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