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Sample GSM1830488 Query DataSets for GSM1830488
Status Public on Jul 23, 2015
Title WB_non-statin_pt_248
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 64.4
fev1/fvc: 46.18
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.737944733
7892504 9.199078648
7892507 7.148804776
7892508 7.325200492
7892509 8.812273276
7892510 6.676204964
7892514 10.26275174
7892515 10.27662084
7892516 5.703313131
7892517 8.032823432
7892520 9.137613959
7892521 9.413836061
7892527 8.160630019
7892530 8.986165629
7892531 8.131595174
7892533 6.772509106
7892534 7.66043675
7892535 7.895301976
7892536 11.58455483
7892538 7.049713637

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830488_S409.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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