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Sample GSM1830481 Query DataSets for GSM1830481
Status Public on Jul 23, 2015
Title WB_statin_pt_82
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: F
smoking status: Current smoker
fev1% predicted: 49.7
fev1/fvc: 60.35
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.650094129
7892504 9.092068715
7892507 7.379675983
7892508 8.009095243
7892509 9.083863631
7892510 7.062113368
7892514 10.1266148
7892515 9.819241601
7892516 5.897873506
7892517 8.289596401
7892520 9.25864706
7892521 9.728069204
7892527 8.485140714
7892530 8.614817507
7892531 8.423695501
7892533 6.9805841
7892534 7.434959935
7892535 7.019827513
7892536 11.3619388
7892538 7.109438508

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830481_S753.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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