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Sample GSM1830480 Query DataSets for GSM1830480
Status Public on Jul 23, 2015
Title WB_non-statin_pt_243
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: F
smoking status: Former smoker
fev1% predicted: 50.6
fev1/fvc: 37.23
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.451506961
7892504 9.350329433
7892507 7.062426122
7892508 7.455015607
7892509 8.550691084
7892510 6.319397514
7892514 9.853197248
7892515 10.06082034
7892516 5.735348304
7892517 8.246857476
7892520 9.067895935
7892521 9.409691509
7892527 8.228719899
7892530 8.467277963
7892531 8.148395818
7892533 6.874289204
7892534 7.339502092
7892535 6.9450639
7892536 11.44215985
7892538 7.046548947

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830480_S412.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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