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Sample GSM1830478 Query DataSets for GSM1830478
Status Public on Jul 23, 2015
Title WB_statin_pt_80
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 75
Sex: M
smoking status: Current smoker
fev1% predicted: 36.1
fev1/fvc: 34.93
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.484007734
7892504 8.78507359
7892507 7.042360324
7892508 7.508826352
7892509 9.022419517
7892510 6.8598911
7892514 9.396469793
7892515 9.865466181
7892516 5.709580837
7892517 8.402647632
7892520 9.205316958
7892521 9.631222241
7892527 8.077938258
7892530 8.466731952
7892531 8.170671744
7892533 6.749867504
7892534 7.399211951
7892535 7.592774485
7892536 11.18871616
7892538 7.121358778

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830478_S998.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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