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Sample GSM1830475 Query DataSets for GSM1830475
Status Public on Jul 23, 2015
Title WB_non-statin_pt_240
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 56
Sex: M
smoking status: Former smoker
fev1% predicted: 22.4
fev1/fvc: 27.24
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.481337605
7892504 9.484209207
7892507 7.133955964
7892508 7.460599868
7892509 8.91827655
7892510 6.131297021
7892514 9.964611937
7892515 10.22824434
7892516 5.581787205
7892517 8.301487031
7892520 9.504317427
7892521 9.198143174
7892527 8.266001451
7892530 8.245616193
7892531 8.26568473
7892533 6.931569477
7892534 7.197604199
7892535 7.841870414
7892536 11.16203684
7892538 7.253696094

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830475_S289.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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