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Sample GSM1830471 Query DataSets for GSM1830471
Status Public on Jul 23, 2015
Title WB_non-statin_pt_237
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 64
Sex: F
smoking status: Former smoker
fev1% predicted: 68.9
fev1/fvc: 60.68
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.354790436
7892504 9.381676369
7892507 5.717410529
7892508 7.477878036
7892509 9.294668921
7892510 6.497606464
7892514 9.873090371
7892515 9.687706096
7892516 5.601923163
7892517 8.171227677
7892520 8.898367817
7892521 9.347004114
7892527 8.152402844
7892530 8.368606363
7892531 8.351147015
7892533 6.755755213
7892534 7.281145456
7892535 6.575786433
7892536 11.49822054
7892538 7.033509093

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830471_S281.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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