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Sample GSM1830468 Query DataSets for GSM1830468
Status Public on Jul 23, 2015
Title WB_statin_pt_77
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 67
Sex: M
smoking status: Current smoker
fev1% predicted: 51.3
fev1/fvc: 48.49
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.55697677
7892504 9.267072108
7892507 6.97169784
7892508 7.35595495
7892509 8.967734259
7892510 6.465297006
7892514 9.822431368
7892515 10.15597025
7892516 5.629360583
7892517 8.147480273
7892520 9.418778545
7892521 9.365641213
7892527 8.193797359
7892530 8.708421184
7892531 8.005960193
7892533 6.675168515
7892534 7.607221568
7892535 7.551588265
7892536 11.87150156
7892538 7.012843204

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830468_S601.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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