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Sample GSM1830461 Query DataSets for GSM1830461
Status Public on Jul 23, 2015
Title WB_statin_pt_75
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: F
smoking status: Former smoker
fev1% predicted: 55.2
fev1/fvc: 49.69
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 5.50079069
7892504 8.72501291
7892507 7.160426035
7892508 7.593218578
7892509 9.024770118
7892510 6.776234114
7892514 10.14777618
7892515 10.00053047
7892516 5.750335441
7892517 8.337851333
7892520 9.375947048
7892521 9.480444102
7892527 8.373083499
7892530 9.243742954
7892531 9.008701595
7892533 6.97967928
7892534 7.962623748
7892535 7.389842006
7892536 11.83342618
7892538 7.1386615

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830461_S918.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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