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Sample GSM1830460 Query DataSets for GSM1830460
Status Public on Jul 23, 2015
Title WB_statin_pt_74
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: F
smoking status: Former smoker
fev1% predicted: 26.5
fev1/fvc: 41.69
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.598517463
7892504 9.469741368
7892507 7.106510152
7892508 7.319936208
7892509 8.858220501
7892510 7.213198734
7892514 10.0165127
7892515 9.984414394
7892516 5.773730962
7892517 8.209236732
7892520 9.371945001
7892521 9.401276483
7892527 8.269582574
7892530 8.515268134
7892531 8.168076839
7892533 7.041774579
7892534 8.108499677
7892535 7.184102917
7892536 11.45264249
7892538 7.128884198

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830460_S979.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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