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Sample GSM1830457 Query DataSets for GSM1830457
Status Public on Jul 23, 2015
Title WB_statin_pt_73
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 73
Sex: M
smoking status: Current smoker
fev1% predicted: 22.7
fev1/fvc: 35.87
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.591690105
7892504 9.171343901
7892507 7.041037636
7892508 8.41659782
7892509 9.585632849
7892510 7.057121074
7892514 9.791681872
7892515 10.11374669
7892516 5.756684842
7892517 8.846678691
7892520 9.505504496
7892521 9.512613042
7892527 9.426123066
7892530 9.439859433
7892531 8.703563345
7892533 7.526291386
7892534 7.42261407
7892535 7.291766242
7892536 10.90206564
7892538 6.842675516

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830457_S729.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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