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Sample GSM1830451 Query DataSets for GSM1830451
Status Public on Jul 23, 2015
Title WB_statin_pt_68
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 24.5
fev1/fvc: 29.12
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.334207905
7892504 9.677685079
7892507 6.296689182
7892508 6.497793933
7892509 7.981089178
7892510 6.219766886
7892514 9.33396131
7892515 10.60650992
7892516 4.397211211
7892517 8.02745782
7892520 9.801923735
7892521 9.333610063
7892527 7.170298939
7892530 8.476100313
7892531 8.135644653
7892533 7.226755425
7892534 7.194357567
7892535 8.161514388
7892536 10.7453762
7892538 7.783322328

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830451_S428.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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