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Sample GSM1830446 Query DataSets for GSM1830446
Status Public on Jul 23, 2015
Title WB_non-statin_pt_223
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 54
Sex: M
smoking status: Former smoker
fev1% predicted: 51.4
fev1/fvc: 35.94
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.53266988
7892504 9.262068216
7892507 7.267524522
7892508 7.764272292
7892509 8.575278867
7892510 6.62502771
7892514 9.737644969
7892515 10.31114527
7892516 5.769909177
7892517 8.344061422
7892520 9.900095875
7892521 9.609730167
7892527 8.70790707
7892530 8.912285031
7892531 8.312547173
7892533 6.994815286
7892534 7.12566223
7892535 7.305471324
7892536 11.0620596
7892538 7.276520047

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830446_S770.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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