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Sample GSM1830445 Query DataSets for GSM1830445
Status Public on Jul 23, 2015
Title WB_non-statin_pt_222
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 66.5
fev1/fvc: 47.29
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.330479657
7892504 9.513834307
7892507 7.838049162
7892508 7.544452531
7892509 8.731539156
7892510 6.105636832
7892514 10.01848959
7892515 10.69855266
7892516 5.816514918
7892517 8.537352071
7892520 9.26986404
7892521 9.698932948
7892527 8.544735151
7892530 8.908652042
7892531 8.361243696
7892533 7.904010251
7892534 7.928828112
7892535 7.465792012
7892536 11.30260583
7892538 7.157752767

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830445_S681.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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