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Sample GSM1830436 Query DataSets for GSM1830436
Status Public on Jul 23, 2015
Title WB_non-statin_pt_214
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 63
Sex: M
smoking status: Never smoked
fev1% predicted: 113.7
fev1/fvc: 84.34
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.626580022
7892504 9.006092221
7892507 7.123834448
7892508 8.400642259
7892509 9.297152966
7892510 6.698357344
7892514 10.22205071
7892515 10.17840137
7892516 5.788735155
7892517 8.674554764
7892520 9.158197593
7892521 9.379945768
7892527 8.371069615
7892530 8.79815843
7892531 8.383511044
7892533 7.116770137
7892534 7.727946554
7892535 7.249198161
7892536 10.94591024
7892538 6.987423074

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830436_S823.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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