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Sample GSM1830432 Query DataSets for GSM1830432
Status Public on Jul 23, 2015
Title WB_non-statin_pt_212
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 61
Sex: F
smoking status: Never smoked
fev1% predicted: 139.8
fev1/fvc: 87.95
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.746492574
7892504 8.602031629
7892507 7.074049787
7892508 7.707142164
7892509 9.12646588
7892510 6.870803083
7892514 9.998096246
7892515 10.00540662
7892516 5.802179573
7892517 8.462445717
7892520 9.796865307
7892521 9.514005968
7892527 8.760834674
7892530 8.626790704
7892531 8.176341049
7892533 6.823934702
7892534 8.097544958
7892535 7.291803645
7892536 11.1616856
7892538 7.266885771

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830432_S975.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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