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Sample GSM1830421 Query DataSets for GSM1830421
Status Public on Jul 23, 2015
Title WB_non-statin_pt_206
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 53
Sex: F
smoking status: Never smoked
fev1% predicted: 88.9
fev1/fvc: 79.44
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.794191901
7892504 9.060747889
7892507 6.935445985
7892508 7.659478977
7892509 9.132090642
7892510 6.565604586
7892514 10.11891749
7892515 10.0891166
7892516 5.634637091
7892517 8.172939115
7892520 9.342236551
7892521 9.172381029
7892527 8.425143391
7892530 8.647872855
7892531 8.394029675
7892533 6.401460203
7892534 7.269906938
7892535 8.15831427
7892536 11.07611723
7892538 6.930820278

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830421_S402.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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