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Sample GSM1830420 Query DataSets for GSM1830420
Status Public on Jul 23, 2015
Title WB_statin_pt_59
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 64
Sex: M
smoking status: Never smoked
fev1% predicted: 131
fev1/fvc: 77.82
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.767798788
7892504 9.267682344
7892507 7.037594473
7892508 7.697954232
7892509 8.417179347
7892510 6.685338159
7892514 9.979146572
7892515 9.865075795
7892516 5.586276855
7892517 8.385456812
7892520 9.357238183
7892521 9.634993599
7892527 8.328310002
7892530 8.885615395
7892531 7.833387343
7892533 6.780222564
7892534 6.774950546
7892535 7.560107162
7892536 11.28887926
7892538 7.030581272

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830420_S230.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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