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Sample GSM1830411 Query DataSets for GSM1830411
Status Public on Jul 23, 2015
Title WB_non-statin_pt_198
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 65.3
fev1/fvc: 53.36
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.464797953
7892504 9.109099195
7892507 7.398603827
7892508 7.414800058
7892509 8.373626144
7892510 5.411063724
7892514 9.440679394
7892515 10.2839902
7892516 5.114359915
7892517 8.163292487
7892520 9.475826327
7892521 9.408849583
7892527 7.512778887
7892530 8.219246701
7892531 8.211588175
7892533 7.131837592
7892534 7.027401546
7892535 7.985647967
7892536 10.90947118
7892538 7.257751909

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830411_S435.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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