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Sample GSM1830409 Query DataSets for GSM1830409
Status Public on Jul 23, 2015
Title WB_non-statin_pt_196
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: M
smoking status: Former smoker
fev1% predicted: 41.8
fev1/fvc: 33.83
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.548918768
7892504 10.00362645
7892507 6.785269695
7892508 7.374084805
7892509 9.020871501
7892510 6.234317702
7892514 10.06546969
7892515 9.901125425
7892516 5.456442452
7892517 8.00794677
7892520 8.917125997
7892521 9.053507891
7892527 8.3509318
7892530 8.634132781
7892531 8.031672364
7892533 7.069994702
7892534 7.797288062
7892535 7.979564729
7892536 11.76333007
7892538 7.154893626

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830409_S829.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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