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Sample GSM1830407 Query DataSets for GSM1830407
Status Public on Jul 23, 2015
Title WB_non-statin_pt_194
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 49.3
fev1/fvc: 32.65
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.132581605
7892504 9.124262435
7892507 6.766764996
7892508 7.237756277
7892509 8.415078431
7892510 6.669837679
7892514 9.40402768
7892515 10.44828468
7892516 5.034893575
7892517 7.854830042
7892520 9.276566894
7892521 9.174258953
7892527 8.078756924
7892530 7.96063339
7892531 7.799117881
7892533 6.751980285
7892534 6.260169209
7892535 6.991425515
7892536 10.87478768
7892538 6.689078002

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830407_S600.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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