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Sample GSM1830406 Query DataSets for GSM1830406
Status Public on Jul 23, 2015
Title WB_non-statin_pt_193
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 69
Sex: M
smoking status: Former smoker
fev1% predicted: 32.6
fev1/fvc: 30.54
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.103069761
7892504 9.087431144
7892507 7.321774877
7892508 7.705710021
7892509 9.001964307
7892510 6.071480485
7892514 9.936151511
7892515 10.31158008
7892516 5.59648581
7892517 8.34987513
7892520 9.724883615
7892521 9.41905569
7892527 8.101699057
7892530 8.708212094
7892531 8.285039512
7892533 5.923801649
7892534 7.46920251
7892535 7.833358127
7892536 11.22250652
7892538 7.646093047

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830406_S184.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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