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Sample GSM1830405 Query DataSets for GSM1830405
Status Public on Jul 23, 2015
Title WB_statin_pt_57
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 64
Sex: M
smoking status: Former smoker
fev1% predicted: 60.4
fev1/fvc: 40.68
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.698721209
7892504 10.10641053
7892507 7.165073086
7892508 7.050893985
7892509 8.775794234
7892510 5.327501853
7892514 9.92739462
7892515 10.10650456
7892516 5.353005053
7892517 7.424877765
7892520 8.75187616
7892521 9.460672714
7892527 7.819268638
7892530 7.228462304
7892531 7.677650311
7892533 6.875226357
7892534 6.864521828
7892535 6.912095216
7892536 11.44682655
7892538 6.065313112

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830405_S817.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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