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Sample GSM1830401 Query DataSets for GSM1830401
Status Public on Jul 23, 2015
Title WB_statin_pt_55
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 69
Sex: F
smoking status: Former smoker
fev1% predicted: 49
fev1/fvc: 39.98
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.622559484
7892504 9.071491369
7892507 7.051917433
7892508 7.409039485
7892509 9.082821695
7892510 6.414548332
7892514 9.93020043
7892515 10.05934869
7892516 5.211279787
7892517 8.031367399
7892520 8.842929107
7892521 9.199782943
7892527 8.116548851
7892530 8.339694605
7892531 8.183342446
7892533 6.416039072
7892534 6.994506889
7892535 6.94096138
7892536 11.42248409
7892538 7.036092387

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830401_S572.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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