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Sample GSM1830400 Query DataSets for GSM1830400
Status Public on Jul 23, 2015
Title WB_non-statin_pt_190
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: F
smoking status: Former smoker
fev1% predicted: 69
fev1/fvc: 61.99
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.765376923
7892504 9.38135746
7892507 7.291221832
7892508 7.560190063
7892509 8.85211059
7892510 6.643141305
7892514 9.902238113
7892515 10.03253332
7892516 6.011398056
7892517 8.414466997
7892520 9.692351889
7892521 9.600917105
7892527 8.403847005
7892530 8.794791166
7892531 8.254537619
7892533 6.845068492
7892534 7.495173135
7892535 8.187905435
7892536 11.23706774
7892538 7.812109177

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830400_S468.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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