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Sample GSM1830399 Query DataSets for GSM1830399
Status Public on Jul 23, 2015
Title WB_non-statin_pt_189
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 69
Sex: M
smoking status: Former smoker
fev1% predicted: 62.8
fev1/fvc: 54.36
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.013797066
7892504 9.862914922
7892507 7.011994225
7892508 8.013081536
7892509 8.80756879
7892510 6.713653236
7892514 9.864758335
7892515 10.64344969
7892516 5.367635722
7892517 8.30961028
7892520 9.122402652
7892521 9.473894433
7892527 7.894661283
7892530 8.28347058
7892531 7.763124296
7892533 7.299529273
7892534 6.625749985
7892535 8.242431971
7892536 11.17706229
7892538 7.061133177

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830399_S240.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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