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Sample GSM1830398 Query DataSets for GSM1830398
Status Public on Jul 23, 2015
Title WB_non-statin_pt_188
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 61
Sex: M
smoking status: Former smoker
fev1% predicted: 23.8
fev1/fvc: 41.06
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.627554321
7892504 9.18190219
7892507 6.676153871
7892508 7.379013505
7892509 8.543479103
7892510 6.794040361
7892514 9.535867605
7892515 10.15983283
7892516 5.736306686
7892517 8.411072047
7892520 9.432447523
7892521 9.427920962
7892527 7.940715262
7892530 8.610781397
7892531 8.317967736
7892533 7.281173621
7892534 7.115579066
7892535 7.489058868
7892536 11.17900958
7892538 7.204313971

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830398_S269.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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