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Sample GSM1830396 Query DataSets for GSM1830396
Status Public on Jul 23, 2015
Title WB_non-statin_pt_187
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 70
Sex: M
smoking status: Former smoker
fev1% predicted: 29.5
fev1/fvc: 36.8
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.79452872
7892504 9.417797875
7892507 6.888919678
7892508 7.754638628
7892509 9.077269298
7892510 6.888411826
7892514 10.09971841
7892515 10.26101109
7892516 5.642013358
7892517 8.435211906
7892520 9.470188503
7892521 9.362219766
7892527 8.268543271
7892530 8.62566287
7892531 8.880667882
7892533 7.32920157
7892534 6.546027377
7892535 6.56319661
7892536 11.40764941
7892538 7.09580948

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830396_S121.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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