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Sample GSM1830393 Query DataSets for GSM1830393
Status Public on Jul 23, 2015
Title WB_statin_pt_52
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 24.9
fev1/fvc: 27.45
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.637311152
7892504 8.693701825
7892507 7.113927521
7892508 7.912065302
7892509 9.6965136
7892510 6.915583338
7892514 9.45430695
7892515 9.804830051
7892516 5.292096341
7892517 8.402746591
7892520 9.544154871
7892521 9.491858376
7892527 8.494627726
7892530 8.561647391
7892531 8.212789442
7892533 6.685959722
7892534 7.273078425
7892535 7.32112491
7892536 10.94590994
7892538 7.076917722

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830393_S518.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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