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Sample GSM1830391 Query DataSets for GSM1830391
Status Public on Jul 23, 2015
Title WB_statin_pt_50
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 47.6
fev1/fvc: 37.18
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.498230156
7892504 8.997403518
7892507 7.244937253
7892508 7.132440251
7892509 8.899015114
7892510 6.695460847
7892514 9.826061774
7892515 10.10388788
7892516 5.615833923
7892517 8.295239559
7892520 9.583709986
7892521 9.682976587
7892527 8.039606235
7892530 8.608059818
7892531 8.160852042
7892533 7.116946181
7892534 7.450996156
7892535 7.95794735
7892536 10.39282325
7892538 7.32472593

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830391_S395.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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