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Sample GSM1830389 Query DataSets for GSM1830389
Status Public on Jul 23, 2015
Title WB_statin_pt_48
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 64
Sex: F
smoking status: Former smoker
fev1% predicted: 40.5
fev1/fvc: 56.06
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.470584224
7892504 9.308652061
7892507 7.036857319
7892508 7.729324803
7892509 8.630324622
7892510 6.015868628
7892514 10.13183414
7892515 10.32831039
7892516 5.58873206
7892517 8.433366526
7892520 9.442084057
7892521 9.318953873
7892527 8.43352355
7892530 8.72924376
7892531 8.200420111
7892533 7.022832809
7892534 7.884109447
7892535 7.17118299
7892536 11.5174334
7892538 7.280788121

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830389_S187.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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