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Sample GSM1830379 Query DataSets for GSM1830379
Status Public on Jul 23, 2015
Title WB_non-statin_pt_179
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 66
Sex: M
smoking status: Never smoked
fev1% predicted: 97.9
fev1/fvc: 76.74
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.476389338
7892504 9.013149664
7892507 7.297499521
7892508 7.642526061
7892509 9.071286556
7892510 6.559662413
7892514 9.913030581
7892515 9.930030348
7892516 5.439934626
7892517 8.425447151
7892520 9.511894092
7892521 9.541264634
7892527 8.344523179
7892530 8.350584054
7892531 7.792982525
7892533 7.078780701
7892534 7.770566381
7892535 7.435606177
7892536 10.71904052
7892538 7.255371906

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830379_S697.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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