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Sample GSM1830376 Query DataSets for GSM1830376
Status Public on Jul 23, 2015
Title WB_statin_pt_44
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 68
Sex: F
smoking status: Never smoked
fev1% predicted: 98.8
fev1/fvc: 79.78
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.621581107
7892504 9.493811571
7892507 6.618007015
7892508 7.033932832
7892509 8.817085273
7892510 6.558121242
7892514 9.658340999
7892515 10.04582311
7892516 5.745593498
7892517 7.924146642
7892520 9.165529074
7892521 9.326752566
7892527 8.35545376
7892530 8.530880779
7892531 8.387885595
7892533 7.090136203
7892534 6.979514424
7892535 6.553161258
7892536 11.36564351
7892538 6.919368239

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830376_S540.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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