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Sample GSM1830372 Query DataSets for GSM1830372
Status Public on Jul 23, 2015
Title WB_non-statin_pt_173
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 65
Sex: M
smoking status: Former smoker
fev1% predicted: 69.3
fev1/fvc: 69.49
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 5.108587498
7892504 9.309958943
7892507 6.74010626
7892508 7.159167833
7892509 9.054346203
7892510 6.620048995
7892514 10.22893003
7892515 10.10711222
7892516 5.901517307
7892517 8.226223475
7892520 9.36337499
7892521 9.307660581
7892527 8.366798755
7892530 8.670371535
7892531 8.34448815
7892533 6.736419476
7892534 6.843537649
7892535 7.299159341
7892536 11.46655715
7892538 7.199985567

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830372_S733.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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