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Sample GSM1830371 Query DataSets for GSM1830371
Status Public on Jul 23, 2015
Title WB_non-statin_pt_172
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 53
Sex: F
smoking status: Former smoker
fev1% predicted: 27.4
fev1/fvc: 40.56
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.705956067
7892504 9.473315767
7892507 6.95173203
7892508 7.512059829
7892509 9.217883245
7892510 6.531226428
7892514 9.749651065
7892515 10.5847442
7892516 5.677995276
7892517 8.470496032
7892520 9.602092392
7892521 9.352487364
7892527 8.04125929
7892530 8.770946029
7892531 8.116554591
7892533 7.247137261
7892534 7.474645296
7892535 7.850687854
7892536 11.19209533
7892538 7.338214927

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830371_S689.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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