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Sample GSM1830370 Query DataSets for GSM1830370
Status Public on Jul 23, 2015
Title WB_non-statin_pt_171
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 50
Sex: M
smoking status: Never smoked
fev1% predicted: 126.1
fev1/fvc: 81.63
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 3.852504505
7892504 9.143899256
7892507 6.882704442
7892508 7.747750982
7892509 9.139285322
7892510 5.59515454
7892514 9.108236002
7892515 10.6206524
7892516 5.528304924
7892517 8.491085659
7892520 9.528353945
7892521 9.317893789
7892527 8.319923626
7892530 8.712245541
7892531 8.241023915
7892533 7.144707482
7892534 6.905443313
7892535 7.605019409
7892536 11.29860761
7892538 7.217505241

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830370_S239.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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