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Sample GSM1830369 Query DataSets for GSM1830369
Status Public on Jul 23, 2015
Title WB_non-statin_pt_170
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 54
Sex: M
smoking status: Never smoked
fev1% predicted: 84.9
fev1/fvc: 76.84
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.634222961
7892504 9.671708817
7892507 7.185567417
7892508 7.416612646
7892509 8.949008098
7892510 6.89178574
7892514 10.16378878
7892515 10.26490215
7892516 5.764518014
7892517 8.057630388
7892520 9.266722805
7892521 9.595845266
7892527 8.215609419
7892530 8.317835109
7892531 7.854233918
7892533 7.192923732
7892534 7.925256046
7892535 8.010000119
7892536 11.40051856
7892538 7.25546274

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830369_S101.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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