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Sample GSM1830361 Query DataSets for GSM1830361
Status Public on Jul 23, 2015
Title WB_statin_pt_42
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 28.8
fev1/fvc: 20.93
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.636937917
7892504 9.391631428
7892507 6.887499019
7892508 7.532252457
7892509 8.651643368
7892510 6.49020163
7892514 9.824176483
7892515 9.9030003
7892516 5.364351833
7892517 8.413254447
7892520 9.470676059
7892521 9.342528901
7892527 8.130687252
7892530 8.687263131
7892531 8.377451046
7892533 6.977998564
7892534 7.355056266
7892535 7.49631081
7892536 11.13327832
7892538 7.296491764

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830361_S505.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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