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Sample GSM1830359 Query DataSets for GSM1830359
Status Public on Jul 23, 2015
Title WB_non-statin_pt_163
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 71
Sex: M
smoking status: Former smoker
fev1% predicted: 48.6
fev1/fvc: 33.97
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.591688628
7892504 9.431866183
7892507 7.148306892
7892508 7.269311673
7892509 8.165270252
7892510 6.921056648
7892514 9.96623428
7892515 10.36588176
7892516 5.739339575
7892517 8.228341388
7892520 9.406789222
7892521 9.423333356
7892527 7.60279219
7892530 8.733442539
7892531 8.325504038
7892533 7.501963592
7892534 8.036950232
7892535 7.615830717
7892536 10.99644826
7892538 7.223873092

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830359_S329.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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