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Sample GSM1830356 Query DataSets for GSM1830356
Status Public on Jul 23, 2015
Title WB_statin_pt_40
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 63
Sex: M
smoking status: Former smoker
fev1% predicted: 29.1
fev1/fvc: 28.91
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.889529702
7892504 9.076924954
7892507 7.080204435
7892508 7.603161881
7892509 8.821634327
7892510 6.595931691
7892514 10.21126714
7892515 10.41319942
7892516 5.740019434
7892517 8.390461389
7892520 9.732000884
7892521 9.621196435
7892527 7.848250603
7892530 9.0792724
7892531 8.678063323
7892533 6.561335749
7892534 7.687552236
7892535 8.267690675
7892536 11.53153059
7892538 7.324378497

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830356_S443.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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