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Sample GSM1830343 Query DataSets for GSM1830343
Status Public on Jul 23, 2015
Title WB_statin_pt_38
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 72
Sex: M
smoking status: Former smoker
fev1% predicted: 45.2
fev1/fvc: 42.05
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.614092423
7892504 9.202122443
7892507 7.009973992
7892508 7.475364517
7892509 9.038765094
7892510 6.89165081
7892514 9.811095884
7892515 10.18710676
7892516 5.672091378
7892517 8.411727563
7892520 9.461148911
7892521 8.682448031
7892527 7.954423223
7892530 8.412503892
7892531 8.08663564
7892533 7.10968321
7892534 7.36007382
7892535 7.369783052
7892536 11.22986966
7892538 7.212437545

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830343_S197.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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